dgbook% grep tandy.common scaf4h6.tandy | perl -ne's/DP_D\D+/D/g; s/NCBI\D+/G/g; s/Dappu1_FM5\D+/J/g; @v=split; print join("\t",@v[1,3,8]),"\n";' tandy.common 6833 ID=td_c1.D00002342;cid=1;ctype=far;nexons=7;altexons=4;ids=D00002342[7,4,3],D00002352[7,5,2] tandy.common 8589 ID=td_c2.D00002720;cid=2;ctype=far;nexons=4;ids=D00002720[8,2,2] tandy.common 8924 ID=td_c3.D00002550;cid=3;ctype=far;nexons=3;ids=D00002550[6,2,2],D00002575[3,1,1] tandy.common 9649 ID=td_c4.D00002421;cid=4;ctype=far;nexons=2;ids=D00002421[2,1,1] tandy.common 11471 ID=td_c5.D00002346;cid=5;ctype=near;nexons=3;ids=D00002346[5,2,2] tandy.common 12339 ID=td_c6.D00002350;cid=6;ctype=far;nexons=4;ids=D00002350[4,3,1] tandy.common 5822 ID=td_c7.D00002341;cid=7;ctype=far;nexons=3;altexons=1;ids=D00002341[4,3,1],D00002353[1,1,0] tandy.common 110808 ID=td_c8.D00002368;cid=8;ctype=near_overlap;nexons=11;altexons=11;ids=D00002368[16,15,1],J221079[6,6,0] tandy.common 119942 ID=td_c9.D00002448;cid=9;ctype=far;nexons=2;ids=D00002448[4,2,2] tandy.common 200930 ID=td_c10.D00002758;cid=10;ctype=far;nexons=1;ids=D00002761[2,2,0],J96205[1,1,0],G728044[1,1,0] tandy.common 358552 ID=td_c11.D00002445;cid=11;ctype=near;nexons=3;altexons=3;ids=D00002445[5,2,2],J95968[1,1,0],G324044[3,1,1] tandy.common 361490 ID=td_c12.D00002421;cid=12;ctype=near_overlap;nexons=46;altexons=27;ids=D00002421[23,10,8],D00002423[3,3,0],D00002446[10,4,3],D00002449[16,7,7],J95969[11,4,4],J221112[2,2,0] tandy.common 362638 ID=td_c13.D00002448;cid=13;ctype=near;nexons=3;ids=D00002448[5,2,2] tandy.common 362915 ID=td_c14.D00002447;cid=14;ctype=near;nexons=6;ids=D00002447[7,4,3] tandy.common 363264 ID=td_c16.D00002648;cid=16;ctype=far;nexons=2;ids=D00002648[4,2,2] tandy.common 363480 ID=td_c17.D00002702;cid=17;ctype=far;nexons=2;ids=D00002702[4,2,2] tandy.common 365492 ID=td_c18.D00002550;cid=18;ctype=far;nexons=3;ids=D00002550[6,2,2],D00002575[3,1,1] tandy.common 365824 ID=td_c19.D00002720;cid=19;ctype=far;nexons=2;ids=D00002720[4,2,2] tandy.common 368282 ID=td_c20.D00002364;cid=20;ctype=far;nexons=1;ids=D00002364[2,2,0],D00002367[1,1,0],D00002377[1,1,0] tandy.common 437838 ID=td_c21.D00002438;cid=21;ctype=far;nexons=24;altexons=36;ids=D00002438[24,19,5],D00002441[12,7,5],J191562[5,5,0],J95963[8,4,4],G308044[10,9,1],G318044[5,3,2] tandy.common 358552 ID=td_c22.D00002420;cid=22;ctype=far;nexons=5;ids=D00002420[7,4,2] tandy.common 454210 ID=td_c23.D00002351;cid=23;ctype=far;nexons=1;ids=D00002351[2,2,0] tandy.common 446287 ID=td_c24.D00002439;cid=24;ctype=near;nexons=10;altexons=22;ids=D00002439[16,8,8],D00002442[13,8,5],J221119[2,1,1],J221121[2,1,1],G310044[1,1,0],G320044[2,1,1] tandy.common 463053 ID=td_c25.D00002637;cid=25;ctype=far;nexons=1;altexons=3;ids=D00002444[2,2,0],D00002637[2,2,0],J191571[1,1,0],J221201[1,1,0] tandy.common 471490 ID=td_c26.D00002365;cid=26;ctype=far;nexons=2;ids=D00002365[4,2,2],D00002366[2,1,1] tandy.common 563390 ID=td_c27.D00002469;cid=27;ctype=near_overlap;nexons=9;altexons=10;ids=D00002469[12,10,2],J221135[7,6,1] tandy.common 562722 ID=td_c28.D00002466;cid=28;ctype=near_overlap;nexons=7;altexons=12;ids=D00002466[12,10,2],J221133[7,6,1] tandy.common 619038 ID=td_c29.D00002550;cid=29;ctype=far;nexons=3;ids=D00002550[6,2,2],D00002575[3,1,1] tandy.common 619372 ID=td_c30.D00002720;cid=30;ctype=far;nexons=3;altexons=2;ids=D00002492[2,1,1],D00002720[6,2,2] tandy.common 619659 ID=td_c31.D00002481;cid=31;ctype=far;nexons=4;altexons=5;ids=D00002481[5,3,2],D00002491[6,4,2] tandy.common 619887 ID=td_c32.D00002495;cid=32;ctype=near;nexons=15;ids=D00002495[15,7,5] tandy.common 620327 ID=td_c33.D00002702;cid=33;ctype=far;nexons=2;ids=D00002702[4,2,2] tandy.common 622047 ID=td_c34.D00002884;cid=34;ctype=far;nexons=4;ids=D00002577[4,2,2],G488044[3,2,1] tandy.common 620029 ID=td_c35.D00002482;cid=35;ctype=near;nexons=24;altexons=35;ids=D00002482[26,12,8],D00002490[31,15,10],D00002498[9,4,4],G366044[1,1,0],G374044[2,1,1] tandy.common 630873 ID=td_c36.D00002946;cid=36;ctype=far;nexons=2;ids=D00002946[2,1,1] tandy.common 636169 ID=td_c37.D00002486;cid=37;ctype=near;nexons=10;altexons=12;ids=D00002486[9,5,4],D00002488[13,6,5],G368044[2,1,1],G372044[4,2,2] tandy.common 637237 ID=td_c38.D00002703;cid=38;ctype=far;nexons=4;ids=D00002703[4,2,2],J221220[3,3,0] tandy.common 640827 ID=td_c39.D00002496;cid=39;ctype=far;nexons=3;ids=D00002496[4,3,1] tandy.common 637298 ID=td_c40.D00002487;cid=40;ctype=near;nexons=4;altexons=3;ids=D00002487[6,5,1],J95996[2,2,0] tandy.common 632814 ID=td_c41.D00002486;cid=41;ctype=near_overlap;nexons=2;altexons=2;ids=D00002485[3,2,1],G368044[2,1,1] tandy.common 631435 ID=td_c42.D00002484;cid=42;ctype=far;nexons=2;altexons=1;ids=D00002484[3,2,1],G350043[1,1,0] tandy.common 651714 ID=td_c43.D00002421;cid=43;ctype=far;nexons=2;ids=D00002449[4,2,2] tandy.common 652867 ID=td_c44.D00002448;cid=44;ctype=far;nexons=1;ids=D00002448[2,2,0] tandy.common 653304 ID=td_c45.D00002648;cid=45;ctype=far;nexons=1;ids=D00002648[2,2,0] tandy.common 662307 ID=td_c46.D00002364;cid=46;ctype=far;nexons=1;ids=D00002364[1,1,0],D00002367[1,1,0],D00002377[2,2,0] tandy.common 662749 ID=td_c47.D00002447;cid=47;ctype=far;nexons=1;ids=D00002447[2,2,0] tandy.common 663660 ID=td_c48.D00002758;cid=48;ctype=far;nexons=1;ids=D00002761[2,2,0],J96205[1,1,0],G728044[1,1,0] tandy.common 788018 ID=td_c49.D00002525;cid=49;ctype=near;nexons=3;ids=D00002525[4,3,1] tandy.common 789462 ID=td_c50.D00002523;cid=50;ctype=near;nexons=3;altexons=3;ids=D00002523[4,3,1],G414044[3,2,1] tandy.common 926075 ID=td_c51.D00002603;cid=51;ctype=far;nexons=1;ids=D00002605[1,1,0] tandy.common 926486 ID=td_c52.D00002550;cid=52;ctype=far;nexons=2;ids=D00002885[4,2,2] tandy.common 927352 ID=td_c53.D00002719;cid=53;ctype=far;nexons=2;ids=D00002719[2,1,1] tandy.common 927581 ID=td_c54.D00002550;cid=54;ctype=far;nexons=5;altexons=5;ids=D00002550[4,4,0],D00002575[6,6,0],D00002673[2,2,0],D00002856[5,5,0],D00002857[1,1,0] tandy.common 926649 ID=td_c55.D00002602;cid=55;ctype=far;nexons=14;altexons=32;ids=D00002548[2,2,0],D00002552[2,2,0],D00002577[2,2,0],D00002602[2,2,0],D00002550[1,1,0] tandy.common 932045 ID=td_c57.D00002720;cid=57;ctype=far;nexons=1;ids=D00002720[2,2,0] tandy.common 932154 ID=td_c58.D00002647;cid=58;ctype=far;nexons=1;ids=D00002647[2,2,0] tandy.common 933515 ID=td_c59.D00002603;cid=59;ctype=far;nexons=1;ids=D00002603[2,2,0] tandy.common 936120 ID=td_c60.D00002758;cid=60;ctype=far;nexons=1;ids=D00002761[2,2,0],J96205[1,1,0],G728044[1,1,0] tandy.common 939044 ID=td_c61.D00002554;cid=61;ctype=near_overlap;nexons=88;altexons=148;ids=D00002553[2,2,0],D00002554[108,40,29],D00002555[6,4,2],J191620[30,11,7],J42415[3,2,1],G452044[4,3,1],G454044[17,7,4],G456044[21,8,5],G458044[13,5,3],G460044[3,1,1],G462044[4,4,0] tandy.common 969425 ID=td_c64.D00002563;cid=64;ctype=near_overlap;nexons=29;altexons=38;ids=D00002561[6,6,0],D00002563[19,13,6],J191628[5,4,1],G472044[10,6,4],G470044[3,2,1] tandy.common 1009649 ID=td_c66.D00002574;cid=66;ctype=near_overlap;nexons=18;altexons=30;ids=D00002573[3,3,0],D00002574[8,6,2],J191643[3,2,1],G486044[7,5,2],G484044[2,1,1] tandy.common 1017372 ID=td_c68.D00002603;cid=68;ctype=near;nexons=20;altexons=8;ids=D00002603[2,2,0],D00002605[7,5,1],G528044[1,1,0],G534044[1,1,0] tandy.common 1017372 ID=td_c69.D00002884;cid=69;ctype=near;nexons=3;ids=D00002577[1,1,0],G488044[3,2,1] tandy.common 1018651 ID=td_c70.D00002719;cid=70;ctype=far;nexons=3;ids=D00002719[3,2,1] tandy.common 1023619 ID=td_c71.D00002720;cid=71;ctype=far;nexons=2;ids=D00002720[4,2,2] tandy.common 1023728 ID=td_c72.D00002647;cid=72;ctype=far;nexons=2;ids=D00002647[4,2,2] tandy.common 1027769 ID=td_c73.D00002758;cid=73;ctype=far;nexons=1;ids=D00002761[2,2,0],J96205[1,1,0],G728044[1,1,0] tandy.common 1173789 ID=td_c74.D00002671;cid=74;ctype=far;nexons=1;ids=D00002671[2,2,0] tandy.common 1024593 ID=td_c75.D00002576;cid=75;ctype=far;nexons=4;ids=D00002576[5,4,1] tandy.common 1176068 ID=td_c76.D00002672;cid=76;ctype=far;nexons=1;altexons=3;ids=D00002603[1,1,0],D00002672[1,1,0],G528044[1,1,0],G532044[1,1,0] tandy.common 1180703 ID=td_c78.D00002479;cid=78;ctype=far;nexons=1;ids=D00002479[1,1,0] tandy.common 1182015 ID=td_c79.D00002719;cid=79;ctype=far;nexons=2;ids=D00002719[2,2,0] tandy.common 1202109 ID=td_c80.D00002613;cid=80;ctype=near_overlap;nexons=13;altexons=24;ids=D00002612[2,2,0],D00002613[16,8,8],J191664[8,4,4],G546044[3,3,0] tandy.common 1251432 ID=td_c82.D00002731;cid=82;ctype=far;nexons=3;ids=D00002731[6,2,2] tandy.common 1341902 ID=td_c83.D00002671;cid=83;ctype=far;nexons=5;ids=D00002671[7,5,2] tandy.common 1342459 ID=td_c84.D00002719;cid=84;ctype=far;nexons=5;ids=D00002719[5,2,1] tandy.common 1344067 ID=td_c85.D00002576;cid=85;ctype=far;nexons=2;ids=D00002576[4,2,2] tandy.common 1344606 ID=td_c86.D00002479;cid=86;ctype=far;nexons=1;ids=D00002479[1,1,0] tandy.common 1345464 ID=td_c87.D00002647;cid=87;ctype=near;nexons=6;ids=D00002647[8,5,2] tandy.common 1349091 ID=td_c88.D00002604;cid=88;ctype=far;nexons=1;ids=D00002604[2,2,0] tandy.common 1349844 ID=td_c89.D00002494;cid=89;ctype=far;nexons=1;ids=D00002494[2,2,0] tandy.common 1351595 ID=td_c90.D00002758;cid=90;ctype=far;nexons=2;ids=D00002761[4,2,2],J96205[2,1,1],G728044[2,1,1] tandy.common 1367323 ID=td_c91.D00002783;cid=91;ctype=far;nexons=1;ids=D00002783[1,1,0] tandy.common 1386808 ID=td_c92.D00002660;cid=92;ctype=near_overlap;nexons=35;altexons=32;ids=D00002657[2,2,0],D00002660[25,13,5],J191715[1,1,0],G604044[11,5,2],G598044[8,6,1] tandy.common 1386828 ID=td_c93.D00002658;cid=93;ctype=near_overlap;nexons=14;altexons=18;ids=D00002658[22,11,4],J28082[5,2,1],G600044[9,6,1] tandy.common 1386547 ID=td_c94.D00002657;cid=94;ctype=near_overlap;nexons=17;altexons=18;ids=D00002656[25,14,5],J191715[2,2,0],G596044[15,8,3] tandy.common 1391718 ID=td_c95.D00002659;cid=95;ctype=near_overlap;nexons=4;altexons=3;ids=D00002659[6,3,2],G602044[3,1,1] tandy.common 1400445 ID=td_c97.D00002731;cid=97;ctype=far;nexons=2;ids=D00002731[4,2,2] tandy.common 1341270 ID=td_c98.D00002645;cid=98;ctype=near;nexons=10;altexons=2;ids=D00002645[12,9,3],G586044[3,2,1] tandy.common 1432051 ID=td_c99.D00002549;cid=99;ctype=far;nexons=1;ids=D00002549[2,2,0],D00002551[1,1,0] tandy.common 1433062 ID=td_c100.D00002492;cid=100;ctype=far;nexons=1;ids=D00002492[2,2,0] tandy.common 1434349 ID=td_c101.G616044;cid=101;ctype=near_overlap;nexons=7;ids=G616044[4,2,2],G648044[5,2,1] tandy.common 1456613 ID=td_c102.D00002682;cid=102;ctype=near_overlap;nexons=2;altexons=2;ids=D00002682[3,2,1],G624044[2,1,1] tandy.common 1556950 ID=td_c103.D00002495;cid=103;ctype=far;nexons=2;ids=D00002495[2,1,1] tandy.common 1612678 ID=td_c104.D00002585;cid=104;ctype=far;nexons=2;ids=D00002585[2,1,1] tandy.common 1646802 ID=td_c105.D00002645;cid=105;ctype=far;nexons=1;ids=D00002645[2,2,0],G586044[1,1,0] tandy.common 1647431 ID=td_c106.D00002671;cid=106;ctype=far;nexons=1;ids=D00002671[2,2,0] tandy.common 1647991 ID=td_c107.D00002602;cid=107;ctype=far;nexons=1;ids=D00002602[2,2,0] tandy.common 1649547 ID=td_c108.D00002576;cid=108;ctype=far;nexons=1;ids=D00002576[2,2,0] tandy.common 1688731 ID=td_c109.D00002735;cid=109;ctype=near_overlap;nexons=8;altexons=13;ids=D00002732[2,2,0],D00002735[13,11,2],J191746[1,1,0],J191748[5,4,1] tandy.common 1683715 ID=td_c110.D00002731;cid=110;ctype=near;nexons=3;ids=D00002731[4,3,1] tandy.common 1800137 ID=td_c111.D00002758;cid=111;ctype=near;nexons=25;altexons=16;ids=D00002758[15,8,7],D00002761[2,2,0],D00002762[12,8,4],J96205[12,7,5],G728044[2,1,1] tandy.common 1807665 ID=td_c113.D00002759;cid=113;ctype=near_overlap;nexons=2;altexons=2;ids=D00002759[3,2,1],G724044[2,1,1] tandy.common 1985473 ID=td_c114.D00002828;cid=114;ctype=far;nexons=2;ids=D00002828[4,2,2] tandy.common 1985880 ID=td_c115.D00002495;cid=115;ctype=far;nexons=4;ids=D00002495[4,2,2] tandy.common 1986678 ID=td_c116.D00002378;cid=116;ctype=far;nexons=1;ids=D00002378[2,2,0] tandy.common 1987145 ID=td_c117.D00002648;cid=117;ctype=far;nexons=1;ids=D00002648[2,2,0] tandy.common 1989184 ID=td_c118.D00002803;cid=118;ctype=near_overlap;nexons=11;altexons=8;ids=D00002803[15,13,2],J96230[4,4,0] tandy.common 1992019 ID=td_c119.D00002363;cid=119;ctype=far;nexons=1;ids=D00002363[2,2,0] tandy.common 1988199 ID=td_c120.D00002800;cid=120;ctype=near;nexons=2;ids=D00002800[3,2,1] tandy.common 1994947 ID=td_c121.D00002493;cid=121;ctype=far;nexons=1;altexons=1;ids=D00002493[2,2,0],D00002801[1,1,0] tandy.common 2008893 ID=td_c122.D00002807;cid=122;ctype=near_overlap;nexons=3;altexons=6;ids=D00002807[6,2,2],D00002809[4,2,1] tandy.common 2015581 ID=td_c123.D00002810;cid=123;ctype=near;nexons=4;ids=D00002810[5,4,1] tandy.common 2033009 ID=td_c124.D00002814;cid=124;ctype=near_overlap;nexons=25;altexons=27;ids=D00002814[35,33,2],J191819[14,13,1],J206954[2,2,0],G784044[3,3,0] tandy.common 2090483 ID=td_c125.D00002822;cid=125;ctype=near_overlap;nexons=76;altexons=104;ids=D00002821[25,11,8],D00002822[24,10,9],D00002823[40,18,14],D00002824[2,1,1],J191827[19,9,6],J191834[3,2,1],G796044[10,4,3],G798044[22,9,8],G800044[16,8,6],J42531[4,4,0],G804044[2,2,0] tandy.common 2107950 ID=td_c127.D00002827;cid=127;ctype=near;nexons=3;ids=D00002827[4,3,1] tandy.common 2133587 ID=td_c128.D00002340;cid=128;ctype=far;nexons=3;altexons=2;ids=D00002340[6,6,0],D00002831[1,1,0],J95887[1,1,0],G198044[1,1,0],G812044[1,1,0] tandy.common 2136718 ID=td_c129.D00002834;cid=129;ctype=near_overlap;nexons=141;altexons=224;ids=D00002832[4,2,2],D00002833[50,23,14],D00002834[4,3,1],D00002835[4,4,0],J206976[8,5,2],J221291[2,2,0],J42553[13,9,2],G814044[1,1,0],G816044[2,1,1],G818044[12,5,5],G820044[23,9,6],G822044[15,9,4],J221292[7,7,0] tandy.common 2245911 ID=td_c133.D00002421;cid=133;ctype=far;nexons=1;ids=D00002449[2,2,0],J95969[1,1,0] tandy.common 2247390 ID=td_c134.D00002671;cid=134;ctype=far;nexons=1;ids=D00002671[2,2,0] tandy.common 2247603 ID=td_c135.D00002719;cid=135;ctype=far;nexons=3;ids=D00002719[3,1,1] tandy.common 2249183 ID=td_c136.D00002760;cid=136;ctype=far;nexons=1;ids=D00002760[2,2,0] tandy.common 2249815 ID=td_c137.D00002604;cid=137;ctype=far;nexons=1;ids=D00002604[2,2,0] tandy.common 2249939 ID=td_c138.D00002720;cid=138;ctype=far;nexons=1;ids=D00002720[2,2,0] tandy.common 2335359 ID=td_c139.D00002884;cid=139;ctype=near_overlap;nexons=4;altexons=8;ids=D00002884[8,6,2],J96305[4,3,1] tandy.common 2354271 ID=td_c140.D00002549;cid=140;ctype=far;nexons=1;ids=D00002549[2,2,0],D00002551[1,1,0] tandy.common 2357913 ID=td_c141.D00002495;cid=141;ctype=far;nexons=1;ids=D00002495[1,1,0] tandy.common 2366863 ID=td_c142.D00002892;cid=142;ctype=near_overlap;nexons=31;altexons=77;ids=D00002891[10,8,2],D00002892[38,14,10],J221319[19,7,5],J96311[5,4,1] tandy.common 2367117 ID=td_c143.D00002894;cid=143;ctype=near_overlap;nexons=73;altexons=207;ids=D00002893[32,10,10],D00002894[59,12,12],D00002895[54,12,12],D00002897[30,12,10],J207029[31,6,6],J42627[15,6,5],G1426043[16,5,5],G920044[14,3,3],G924044[21,4,4] tandy.common 2376243 ID=td_c147.D00002898;cid=147;ctype=near_overlap;nexons=13;altexons=28;ids=D00002896[1,1,0],D00002898[26,12,4],J230334[13,6,2],G926044[1,1,0] tandy.common 2428128 ID=td_c148.D00002914;cid=148;ctype=near_overlap;nexons=38;altexons=47;ids=D00002912[6,6,0],D00002913[10,6,4],J221334[3,3,0],J42005[2,1,1],G950044[1,1,0],D00002914[14,10,4],D00002915[15,11,4],G952044[5,4,1] tandy.common 2445820 ID=td_c151.D00002918;cid=151;ctype=near_overlap;nexons=13;altexons=14;ids=D00002918[18,16,2],J221337[8,6,2],J221338[2,2,0],G962044[1,1,0] tandy.common 2444795 ID=td_c152.D00002917;cid=152;ctype=near_overlap;nexons=9;altexons=9;ids=D00002917[12,8,3],G958044[9,6,2] tandy.common 2463997 ID=td_c153.D00002926;cid=153;ctype=near_overlap;nexons=25;altexons=34;ids=D00002925[4,4,0],D00002926[15,6,4],D00002931[2,2,0],J207081[1,1,0],G976044[2,2,0],G982044[7,3,2] tandy.common 2463577 ID=td_c154.D00002924;cid=154;ctype=near_overlap;nexons=76;altexons=126;ids=D00002923[2,2,0],D00002924[46,20,12],D00002925[2,2,0],D00002927[8,6,2],D00002928[6,4,2],D00002929[3,1,1],D00002931[2,2,0],J207081[1,1,0],J221343[7,5,2],J42371[13,5,4],G970044[1,1,0],G972044[13,5,4],G974044[4,2,2],G976044[1,1,0],G984044[1,1,0],G988044[1,1,0] tandy.common 2523771 ID=td_c161.D00003039;cid=161;ctype=far;nexons=1;ids=D00003039[2,2,0] tandy.common 2524908 ID=td_c162.D00002495;cid=162;ctype=far;nexons=1;ids=D00002495[1,1,0] tandy.common 2573344 ID=td_c163.D00002949;cid=163;ctype=near_overlap;nexons=2;altexons=3;ids=D00002949[3,2,1],J96377[1,1,0],G1022044[2,1,1] tandy.common 2622376 ID=td_c164.D00002806;cid=164;ctype=far;nexons=1;altexons=3;ids=D00002808[2,2,0],D00002968[2,2,0],J230338[1,1,0] tandy.common 2646055 ID=td_c165.D00002978;cid=165;ctype=far;nexons=6;altexons=4;ids=D00002978[9,6,3],D00002984[3,2,1] tandy.common 2750575 ID=td_c166.D00003006;cid=166;ctype=near_overlap;nexons=38;altexons=53;ids=D00003006[25,15,10],D00003007[30,23,7],J187297[5,5,0],J221360[14,9,5],J221362[4,3,1],G1096044[8,5,3],G1098044[10,7,3] tandy.common 2781434 ID=td_c167.D00003016;cid=167;ctype=near_overlap;nexons=5;altexons=6;ids=D00003016[8,5,3],J96428[3,2,1] tandy.common 2781375 ID=td_c168.D00003015;cid=168;ctype=near_overlap;nexons=2;altexons=3;ids=D00003014[3,2,1],G1106044[2,1,1],G1110044[1,1,0] tandy.common 2782869 ID=td_c169.D00003015;cid=169;ctype=near_overlap;nexons=5;altexons=2;ids=D00003015[6,4,2],G1106044[2,1,1] tandy.common 2864586 ID=td_c170.D00003039;cid=170;ctype=near;nexons=3;ids=D00003039[4,3,1] tandy.common 2864813 ID=td_c171.D00003037;cid=171;ctype=near;nexons=2;ids=D00003037[3,2,1] tandy.common 2926706 ID=td_c172.D00003050;cid=172;ctype=near_overlap;nexons=3;altexons=3;ids=D00003050[4,3,1],G1150044[3,2,1] tandy.common 3064323 ID=td_c173.D00002421;cid=173;ctype=far;nexons=1;ids=D00002449[2,2,0],J95969[1,1,0] tandy.common 3053630 ID=td_c174.D00003086;cid=174;ctype=near;nexons=40;altexons=34;ids=D00003086[39,36,3],J192069[13,13,0],J96503[14,11,3],G1200044[10,10,0] dgbook% grep tandy.common cyp934h5.tandy | perl -ne's/DP_D\D+/D/g; s/NCBI\D+/G/g; s/Dap\D+/J/g; @v=split; print join("\t",@v[1,3,8]),"\n";' tandy.common 926075 ID=td_c.D00002603;cid=18;ids=D00002605[1,1,0];nexons=1 tandy.common 926486 ID=td_c.D00002550;cid=6;ids=D00002885[4,2,2];nexons=2 tandy.common 927352 ID=td_c.D00002719;cid=20;ids=D00002719[2,1,1];nexons=2 tandy.common 927581 ID=td_c.D00002550;cid=6;ids=D00002550[4,4,0],D00002575[6,6,0],D00002673[2,2,0],D00002856[5,5,0],D00002857[1,1,0];nexons=5;altexons=5 tandy.common 926649 ID=td_c.D00002602;cid=5;ids=D00002548[2,2,0],D00002552[2,2,0],D00002577[2,2,0],D00002602[2,2,0],D00002550[1,1,0];nexons=14;altexons=32 tandy.common 932045 ID=td_c.D00002720;cid=21;ids=D00002720[2,2,0];nexons=1 tandy.common 932154 ID=td_c.D00002647;cid=22;ids=D00002647[2,2,0];nexons=1 tandy.common 933515 ID=td_c.D00002603;cid=18;ids=D00002603[2,2,0];nexons=1 tandy.common 936120 ID=td_c.D00002758;cid=23;ids=D00002761[2,2,0],J1_FM5_96205[1,1,0],G728044[1,1,0];nexons=1 tandy.common 939044 ID=td_c.D00002554;cid=11;ids=D00002553[2,2,0],D00002554[108,40,29],D00002555[6,4,2],J1_FM5_191620[30,11,7],J1_FM5_42415[3,2,1],G452044[4,3,1],G454044[17,7,4],G456044[21,8,5],G458044[13,5,3],G460044[3,1,1],G462044[4,4,0];nexons=88;altexons=148 tandy.common 969425 ID=td_c.D00002563;cid=15;ids=D00002561[6,6,0],D00002563[19,13,6],J1_FM5_191628[5,4,1],G472044[10,6,4],G470044[3,2,1];nexons=29;altexons=38 tandy.common 1009649 ID=td_c.D00002574;cid=16;ids=D00002573[3,3,0],D00002574[8,6,2],J1_FM5_191643[3,2,1],G486044[7,5,2],G484044[2,1,1];nexons=18;altexons=30 tandy.common 1017372 ID=td_c.D00002603;cid=18;ids=D00002605[1,1,0];nexons=1 tandy.common 1017372 ID=td_c.D00002884;cid=19;ids=D00002577[1,1,0],G488044[3,2,1];nexons=3 tandy.common 1018651 ID=td_c.D00002719;cid=20;ids=D00002719[2,1,1];nexons=2 tandy.common 1023619 ID=td_c.D00002720;cid=21;ids=D00002720[2,2,0];nexons=1 tandy.common 1023728 ID=td_c.D00002647;cid=22;ids=D00002647[2,2,0];nexons=1 tandy.common 1027769 ID=td_c.D00002758;cid=23;ids=D00002761[2,2,0],J1_FM5_96205[1,1,0],G728044[1,1,0];nexons=1 ............................... tandy.common 926075 ID=td_c1.D00002603;cid=1;ctype=far;nexons=1;ids=D00002605[1,1,0] tandy.far 926075 ID=td_D00002605;cid=1;gid=1438;altid=D00002605 tandy.common 926486 ID=td_c2.D00002550;cid=2;ctype=far;nexons=2;ids=D00002885[4,2,2] tandy.far 926486 ID=td_D00002885;cid=2;gid=968;altid=D00002885 tandy.common 927352 ID=td_c3.D00002719;cid=3;ctype=far;nexons=2;ids=D00002719[2,1,1] tandy.far 927352 ID=td_D00002719;cid=3;gid=985;altid=D00002719 tandy.common 927581 ID=td_c4.D00002550;cid=4;ctype=far;nexons=5;altexons=5;ids=D00002550[4,4,0],D00002575[6,6,0],D00002673[2,2,0],D00002856[5,5,0],D00002857[1,1,0] tandy.far 927581 ID=td_D00002575;cid=4;gid=1070;altid=D00002550.D00002575.D00002673.D00002856 tandy.far 928118 ID=td_D00002856;cid=4;gid=1139;altid=D00002856.D00002857 tandy.common 926649 ID=td_c5.D00002602;cid=5;ctype=far;nexons=14;altexons=32;ids=D00002548[2,2,0],D00002552[2,2,0],D00002577[2,2,0],D00002602[2,2,0],D00002550[1,1,0] tandy.near_overlap 926649 ID=td_D00002548;cid=5;gid=1682;altid=D00002548.D00002552.D00002577 tandy.far 927828 ID=td_D00002602;cid=5;gid=1595;altid=D00002548.D00002552.D00002577.D00002602 tandy.far 932155 ID=td_D00002550;cid=5;gid=1037;altid=D00002550 tandy.common 932045 ID=td_c7.D00002720;cid=7;ctype=far;nexons=1;ids=D00002720[2,2,0] tandy.far 932045 ID=td_D00002720;cid=7;gid=992;altid=D00002720 tandy.common 932154 ID=td_c8.D00002647;cid=8;ctype=far;nexons=1;ids=D00002647[2,2,0] tandy.far 932154 ID=td_D00002647;cid=8;gid=1492;altid=D00002647 tandy.common 933515 ID=td_c9.D00002603;cid=9;ctype=far;nexons=1;ids=D00002603[2,2,0] tandy.far 933515 ID=td_D00002603;cid=9;gid=1212;altid=D00002603 tandy.common 936120 ID=td_c10.D00002758;cid=10;ctype=far;nexons=1;ids=D00002761[2,2,0],J1_FM5_96205[1,1,0],G728044[1,1,0] tandy.far 936120 ID=td_D00002761;cid=10;gid=1280;altid=D00002761.J1_FM5_96205.G728044 tandy.common 939044 ID=td_c11.D00002554;cid=11;ctype=near_overlap;nexons=88;altexons=148;ids=D00002553[2,2,0],D00002554[108,40,29],D00002555[6,4,2],J1_FM5_191620[30,11,7],J1_FM5_42415[3,2,1],G452044[4,3,1],G454044[17,7,4],G456044[21,8,5],G458044[13,5,3],G460044[3,1,1],G462044[4,4,0] tandy.near_overlap 939044 ID=td_D00002554;cid=11;gid=1690;altid=D00002554.D00002555.J1_FM5_191620.J1_FM5_42415.G452044.G454044.G456044.G458044.G460044 tandy.near 939262 ID=td_D00002553;cid=11;gid=1478;altid=D00002553.G452044 tandy.near_overlap 939262 ID=td_J1_FM5_191620;cid=11;gid=65;altid=D00002553.D00002555.J1_FM5_191620.J1_FM5_42415.G452044.G456044 tandy.near_overlap 942937 ID=td_D00002555;cid=11;gid=952;altid=D00002555.J1_FM5_42415.G458044.G460044.G462044 tandy.common 969425 ID=td_c14.D00002563;cid=14;ctype=near_overlap;nexons=29;altexons=38;ids=D00002561[6,6,0],D00002563[19,13,6],J1_FM5_191628[5,4,1],G472044[10,6,4],G470044[3,2,1] tandy.near_overlap 969425 ID=td_D00002561;cid=14;gid=1521;altid=D00002561.J1_FM5_191628.G470044 tandy.near_overlap 969875 ID=td_D00002563;cid=14;gid=1096;altid=D00002561.D00002563.J1_FM5_191628.G472044 tandy.common 1009649 ID=td_c16.D00002574;cid=16;ctype=near_overlap;nexons=18;altexons=30;ids=D00002573[3,3,0],D00002574[8,6,2],J1_FM5_191643[3,2,1],G486044[7,5,2],G484044[2,1,1] tandy.near_overlap 1009649 ID=td_D00002574;cid=16;gid=1699;altid=D00002573.D00002574.J1_FM5_191643.G486044 tandy.near_overlap 1009649 ID=td_D00002573;cid=16;gid=1603;altid=D00002573.J1_FM5_191643.G484044.G486044 tandy.common 1017372 ID=td_c18.D00002603;cid=18;ctype=far;nexons=1;ids=D00002605[1,1,0] tandy.far 1017372 ID=td_D00002605;cid=18;gid=1438;altid=D00002605 tandy.common 1017372 ID=td_c19.D00002884;cid=19;ctype=near;nexons=3;ids=D00002577[1,1,0],G488044[3,2,1] tandy.near 1017372 ID=td_D00002577;cid=19;gid=1567;altid=D00002577.G488044 tandy.common 1018651 ID=td_c20.D00002719;cid=20;ctype=far;nexons=2;ids=D00002719[2,1,1] tandy.far 1018651 ID=td_D00002719;cid=20;gid=985;altid=D00002719 tandy.common 1023619 ID=td_c21.D00002720;cid=21;ctype=far;nexons=1;ids=D00002720[2,2,0] tandy.far 1023619 ID=td_D00002720;cid=21;gid=992;altid=D00002720 tandy.common 1023728 ID=td_c22.D00002647;cid=22;ctype=far;nexons=1;ids=D00002647[2,2,0] tandy.far 1023728 ID=td_D00002647;cid=22;gid=1492;altid=D00002647 tandy.common 1027769 ID=td_c23.D00002758;cid=23;ctype=far;nexons=1;ids=D00002761[2,2,0],J1_FM5_96205[1,1,0],G728044[1,1,0] tandy.far 1027769 ID=td_D00002761;cid=23;gid=1280;altid=D00002761.J1_FM5_96205.G728044 .................................... # Effect of -igpartial partial alt exon matches --noigpartial dgbook% grep tandy.common cyp934h7.tandy | perl -ne 's/ids=.*$//; s/DP_D\D+/D/g; s/NCBI\D+/G/g; s/Dappu1_FM5\D+/J/g; @v=split; $b=join("-",@v[3,4]); print join("\t",$v[1],$b,$v[8]),"\n";' tandy.common 926075-935874 ID=td_c1.D00002884;cid=1;ctype=far;nexons=36;altexons=54; tandy.common 932045-932130 ID=td_c2.D00002720;cid=2;ctype=far;nexons=1; tandy.common 936120-936232 ID=td_c3.D00002758;cid=3;ctype=far;nexons=1; tandy.common 939044-956351 ID=td_c4.D00002554;cid=4;ctype=near_overlap;nexons=98;altexons=147; tandy.common 969425-974809 ID=td_c7.D00002563;cid=7;ctype=near_overlap;nexons=42;altexons=37; tandy.common 1008798-1028305 ID=td_c8.D00002574;cid=8;ctype=near_overlap;nexons=74;altexons=65; tandy.common 1023619-1023704 ID=td_c9.D00002720;cid=9;ctype=far;nexons=1; tandy.common 1027769-1027881 ID=td_c10.D00002758;cid=10;ctype=far;nexons=1; --igpartial dgbook% grep tandy.common cyp934h6.tandy | perl -ne 's/ids=.*$//; s/DP_D\D+/D/g; s/NCBI\D+/G/g; s/Dappu1_FM5\D+/J/g; @v=split; $b=join("-",@v[3,4]); print join("\t",$v[1],$b,$v[8]),"\n";' tandy.common 926075-926178 ID=td_c1.D00002603;cid=1;ctype=far;nexons=1; tandy.common 926486-935874 ID=td_c2.D00002550;cid=2;ctype=far;nexons=2; tandy.common 927352-935008 ID=td_c3.D00002719;cid=3;ctype=far;nexons=2; tandy.common 927581-931796 ID=td_c4.D00002550;cid=4;ctype=far;nexons=5;altexons=5; tandy.common 926649-935711 ID=td_c5.D00002602;cid=5;ctype=far;nexons=14;altexons=32; ^^ combined tandy.common 932045-932130 ID=td_c7.D00002720;cid=7;ctype=far;nexons=1; << same tandy.common 932154-932306 ID=td_c8.D00002647;cid=8;ctype=far;nexons=1; << dropped? tandy.common 933515-933627 ID=td_c9.D00002603;cid=9;ctype=far;nexons=1; << dropped? tandy.common 936120-936232 ID=td_c10.D00002758;cid=10;ctype=far;nexons=1; << same tandy.common 939044-956351 ID=td_c11.D00002554;cid=11;ctype=near_overlap;nexons=88;altexons=148; << same tandy.common 969425-974809 ID=td_c14.D00002563;cid=14;ctype=near_overlap;nexons=29;altexons=38; << same tandy.common 1009649-1014899 ID=td_c16.D00002574;cid=16;ctype=near_overlap;nexons=18;altexons=30; tandy.common 1017372-1017475 ID=td_c18.D00002603;cid=18;ctype=far;nexons=1; tandy.common 1017372-1028305 ID=td_c19.D00002884;cid=19;ctype=near;nexons=3; ^^ combined, extended tandy.common 1018651-1026655 ID=td_c20.D00002719;cid=20;ctype=far;nexons=2; << dropped? tandy.common 1023619-1023704 ID=td_c21.D00002720;cid=21;ctype=far;nexons=1; << same tandy.common 1023728-1023880 ID=td_c22.D00002647;cid=22;ctype=far;nexons=1; << dropped? tandy.common 1027769-1027881 ID=td_c23.D00002758;cid=23;ctype=far;nexons=1; << same --------- egrep -v 'tandy.common|match_part' scaf4h6.tandy | perl -ne \ 's/DP_D\D+/D/g; s/NCBI\D+/G/g; s/Dappu1_FM5\D+/J/g; @v=split; $b=join("-",@v[3,4]); print join("\t",$v[1],$b,$v[8]),"\n";' \ | grep near dgbook% egrep 'tandy.common' scaf4h6.tandy | perl -ne's/DP_D\D+/D/g; s/NCBI\D+/G/g; s/Dappu1_FM5\D+/J/g; @v=split; $b=join("-",@v[3,4]); print join("\t",$v[1],$b,$v[8]),"\n";' | grep near tandy.common 11471-45789 ID=td_c5.D00002346;cid=5;ctype=near;nexons=3;ids=D00002346[5,2,2] tandy.common 110808-125146 ID=td_c8.D00002368;cid=8;ctype=near_overlap;nexons=11;altexons=11;ids=D00002368[16,15,1],J221079[6,6,0] tandy.common 358552-479381 ID=td_c11.D00002445;cid=11;ctype=near;nexons=3;altexons=3;ids=D00002445[5,2,2],J95968[1,1,0],G324044[3,1,1] tandy.common 361490-479165 ID=td_c12.D00002421;cid=12;ctype=near_overlap;nexons=46;altexons=27;ids=D00002421[23,10,8],D00002423[3,3,0],D00002446[10,4,3],D00002449[16,7,7],J95969[11,4,4],J221112[2,2,0] tandy.common 362638-475665 ID=td_c13.D00002448;cid=13;ctype=near;nexons=3;ids=D00002448[5,2,2] tandy.common 362915-475665 ID=td_c14.D00002447;cid=14;ctype=near;nexons=6;ids=D00002447[7,4,3] tandy.common 446287-458791 ID=td_c24.D00002439;cid=24;ctype=near;nexons=10;altexons=22;ids=D00002439[16,8,8],D00002442[13,8,5],J221119[2,1,1],J221121[2,1,1],G310044[1,1,0],G320044[2,1,1] tandy.common 563390-573026 ID=td_c27.D00002469;cid=27;ctype=near_overlap;nexons=9;altexons=10;ids=D00002469[12,10,2],J221135[7,6,1] tandy.common 562722-569599 ID=td_c28.D00002466;cid=28;ctype=near_overlap;nexons=7;altexons=12;ids=D00002466[12,10,2],J221133[7,6,1] tandy.common 619887-671633 ID=td_c32.D00002495;cid=32;ctype=near;nexons=15;ids=D00002495[15,7,5] tandy.common 620029-673681 ID=td_c35.D00002482;cid=35;ctype=near;nexons=24;altexons=35;ids=D00002482[26,12,8],D00002490[31,15,10],D00002498[9,4,4],G366044[1,1,0],G374044[2,1,1] tandy.common 636169-666837 ID=td_c37.D00002486;cid=37;ctype=near;nexons=10;altexons=12;ids=D00002486[9,5,4],D00002488[13,6,5],G368044[2,1,1],G372044[4,2,2] tandy.common 637298-642616 ID=td_c40.D00002487;cid=40;ctype=near;nexons=4;altexons=3;ids=D00002487[6,5,1],J95996[2,2,0] tandy.common 632814-647011 ID=td_c41.D00002486;cid=41;ctype=near_overlap;nexons=2;altexons=2;ids=D00002485[3,2,1],G368044[2,1,1] tandy.common 788018-795008 ID=td_c49.D00002525;cid=49;ctype=near;nexons=3;ids=D00002525[4,3,1] tandy.common 789462-790292 ID=td_c50.D00002523;cid=50;ctype=near;nexons=3;altexons=3;ids=D00002523[4,3,1],G414044[3,2,1] tandy.common 939044-956351 ID=td_c61.D00002554;cid=61;ctype=near_overlap;nexons=88;altexons=148;ids=D00002553[2,2,0],D00002554[108,40,29],D00002555[6,4,2],J191620[30,11,7],J42415[3,2,1],G452044[4,3,1],G454044[17,7,4],G456044[21,8,5],G458044[13,5,3],G460044[3,1,1],G462044[4,4,0] tandy.common 969425-974809 ID=td_c64.D00002563;cid=64;ctype=near_overlap;nexons=29;altexons=38;ids=D00002561[6,6,0],D00002563[19,13,6],J191628[5,4,1],G472044[10,6,4],G470044[3,2,1] tandy.common 1009649-1014899 ID=td_c66.D00002574;cid=66;ctype=near_overlap;nexons=18;altexons=30;ids=D00002573[3,3,0],D00002574[8,6,2],J191643[3,2,1],G486044[7,5,2],G484044[2,1,1] tandy.common 1017372-1183257 ID=td_c68.D00002603;cid=68;ctype=near;nexons=20;altexons=8;ids=D00002603[2,2,0],D00002605[7,5,1],G528044[1,1,0],G534044[1,1,0] tandy.common 1017372-1028305 ID=td_c69.D00002884;cid=69;ctype=near;nexons=3;ids=D00002577[1,1,0],G488044[3,2,1] tandy.common 1202109-1204464 ID=td_c80.D00002613;cid=80;ctype=near_overlap;nexons=13;altexons=24;ids=D00002612[2,2,0],D00002613[16,8,8],J191664[8,4,4],G546044[3,3,0] tandy.common 1345464-1437677 ID=td_c87.D00002647;cid=87;ctype=near;nexons=6;ids=D00002647[8,5,2] tandy.common 1386808-1398478 ID=td_c92.D00002660;cid=92;ctype=near_overlap;nexons=35;altexons=32;ids=D00002657[2,2,0],D00002660[25,13,5],J191715[1,1,0],G604044[11,5,2],G598044[8,6,1] tandy.common 1386828-1396436 ID=td_c93.D00002658;cid=93;ctype=near_overlap;nexons=14;altexons=18;ids=D00002658[22,11,4],J28082[5,2,1],G600044[9,6,1] tandy.common 1386547-1396471 ID=td_c94.D00002657;cid=94;ctype=near_overlap;nexons=17;altexons=18;ids=D00002656[25,14,5],J191715[2,2,0],G596044[15,8,3] tandy.common 1391718-1398497 ID=td_c95.D00002659;cid=95;ctype=near_overlap;nexons=4;altexons=3;ids=D00002659[6,3,2],G602044[3,1,1] tandy.common 1341270-1429088 ID=td_c98.D00002645;cid=98;ctype=near;nexons=10;altexons=2;ids=D00002645[12,9,3],G586044[3,2,1] tandy.common 1434349-1563454 ID=td_c101.G616044;cid=101;ctype=near_overlap;nexons=7;ids=G616044[4,2,2],G648044[5,2,1] tandy.common 1456613-1459179 ID=td_c102.D00002682;cid=102;ctype=near_overlap;nexons=2;altexons=2;ids=D00002682[3,2,1],G624044[2,1,1] tandy.common 1688731-1702856 ID=td_c109.D00002735;cid=109;ctype=near_overlap;nexons=8;altexons=13;ids=D00002732[2,2,0],D00002735[13,11,2],J191746[1,1,0],J191748[5,4,1] tandy.common 1683715-1695361 ID=td_c110.D00002731;cid=110;ctype=near;nexons=3;ids=D00002731[4,3,1] tandy.common 1800137-1812954 ID=td_c111.D00002758;cid=111;ctype=near;nexons=25;altexons=16;ids=D00002758[15,8,7],D00002761[2,2,0],D00002762[12,8,4],J96205[12,7,5],G728044[2,1,1] tandy.common 1807665-1808486 ID=td_c113.D00002759;cid=113;ctype=near_overlap;nexons=2;altexons=2;ids=D00002759[3,2,1],G724044[2,1,1] tandy.common 1989184-2005974 ID=td_c118.D00002803;cid=118;ctype=near_overlap;nexons=11;altexons=8;ids=D00002803[15,13,2],J96230[4,4,0] tandy.common 1988199-1993880 ID=td_c120.D00002800;cid=120;ctype=near;nexons=2;ids=D00002800[3,2,1] tandy.common 2008893-2023396 ID=td_c122.D00002807;cid=122;ctype=near_overlap;nexons=3;altexons=6;ids=D00002807[6,2,2],D00002809[4,2,1] tandy.common 2015581-2024939 ID=td_c123.D00002810;cid=123;ctype=near;nexons=4;ids=D00002810[5,4,1] tandy.common 2033009-2044137 ID=td_c124.D00002814;cid=124;ctype=near_overlap;nexons=25;altexons=27;ids=D00002814[35,33,2],J191819[14,13,1],J206954[2,2,0],G784044[3,3,0] tandy.common 2090483-2104780 ID=td_c125.D00002822;cid=125;ctype=near_overlap;nexons=76;altexons=104;ids=D00002821[25,11,8],D00002822[24,10,9],D00002823[40,18,14],D00002824[2,1,1],J191827[19,9,6],J191834[3,2,1],G796044[10,4,3],G798044[22,9,8],G800044[16,8,6],J42531[4,4,0],G804044[2,2,0] tandy.common 2107950-2117109 ID=td_c127.D00002827;cid=127;ctype=near;nexons=3;ids=D00002827[4,3,1] tandy.common 2136718-2164271 ID=td_c129.D00002834;cid=129;ctype=near_overlap;nexons=141;altexons=224;ids=D00002832[4,2,2],D00002833[50,23,14],D00002834[4,3,1],D00002835[4,4,0],J206976[8,5,2],J221291[2,2,0],J42553[13,9,2],G814044[1,1,0],G816044[2,1,1],G818044[12,5,5],G820044[23,9,6],G822044[15,9,4],J221292[7,7,0] tandy.common 2335359-2339273 ID=td_c139.D00002884;cid=139;ctype=near_overlap;nexons=4;altexons=8;ids=D00002884[8,6,2],J96305[4,3,1] tandy.common 2366863-2381999 ID=td_c142.D00002892;cid=142;ctype=near_overlap;nexons=31;altexons=77;ids=D00002891[10,8,2],D00002892[38,14,10],J221319[19,7,5],J96311[5,4,1] tandy.common 2367117-2389362 ID=td_c143.D00002894;cid=143;ctype=near_overlap;nexons=73;altexons=207;ids=D00002893[32,10,10],D00002894[59,12,12],D00002895[54,12,12],D00002897[30,12,10],J207029[31,6,6],J42627[15,6,5],G1426043[16,5,5],G920044[14,3,3],G924044[21,4,4] tandy.common 2376243-2390272 ID=td_c147.D00002898;cid=147;ctype=near_overlap;nexons=13;altexons=28;ids=D00002896[1,1,0],D00002898[26,12,4],J230334[13,6,2],G926044[1,1,0] tandy.common 2428128-2440394 ID=td_c148.D00002914;cid=148;ctype=near_overlap;nexons=38;altexons=47;ids=D00002912[6,6,0],D00002913[10,6,4],J221334[3,3,0],J42005[2,1,1],G950044[1,1,0],D00002914[14,10,4],D00002915[15,11,4],G952044[5,4,1] tandy.common 2445820-2450151 ID=td_c151.D00002918;cid=151;ctype=near_overlap;nexons=13;altexons=14;ids=D00002918[18,16,2],J221337[8,6,2],J221338[2,2,0],G962044[1,1,0] tandy.common 2444795-2449200 ID=td_c152.D00002917;cid=152;ctype=near_overlap;nexons=9;altexons=9;ids=D00002917[12,8,3],G958044[9,6,2] tandy.common 2463997-2488049 ID=td_c153.D00002926;cid=153;ctype=near_overlap;nexons=25;altexons=34;ids=D00002925[4,4,0],D00002926[15,6,4],D00002931[2,2,0],J207081[1,1,0],G976044[2,2,0],G982044[7,3,2] tandy.common 2463577-2488049 ID=td_c154.D00002924;cid=154;ctype=near_overlap;nexons=76;altexons=126;ids=D00002923[2,2,0],D00002924[46,20,12],D00002925[2,2,0],D00002927[8,6,2],D00002928[6,4,2],D00002929[3,1,1],D00002931[2,2,0],J207081[1,1,0],J221343[7,5,2],J42371[13,5,4],G970044[1,1,0],G972044[13,5,4],G974044[4,2,2],G976044[1,1,0],G984044[1,1,0],G988044[1,1,0] tandy.common 2573344-2587617 ID=td_c163.D00002949;cid=163;ctype=near_overlap;nexons=2;altexons=3;ids=D00002949[3,2,1],J96377[1,1,0],G1022044[2,1,1] tandy.common 2750575-2758795 ID=td_c166.D00003006;cid=166;ctype=near_overlap;nexons=38;altexons=53;ids=D00003006[25,15,10],D00003007[30,23,7],J187297[5,5,0],J221360[14,9,5],J221362[4,3,1],G1096044[8,5,3],G1098044[10,7,3] tandy.common 2781434-2787989 ID=td_c167.D00003016;cid=167;ctype=near_overlap;nexons=5;altexons=6;ids=D00003016[8,5,3],J96428[3,2,1] tandy.common 2781375-2785749 ID=td_c168.D00003015;cid=168;ctype=near_overlap;nexons=2;altexons=3;ids=D00003014[3,2,1],G1106044[2,1,1],G1110044[1,1,0] tandy.common 2782869-2787982 ID=td_c169.D00003015;cid=169;ctype=near_overlap;nexons=5;altexons=2;ids=D00003015[6,4,2],G1106044[2,1,1] tandy.common 2864586-2874190 ID=td_c170.D00003039;cid=170;ctype=near;nexons=3;ids=D00003039[4,3,1] tandy.common 2864813-2870579 ID=td_c171.D00003037;cid=171;ctype=near;nexons=2;ids=D00003037[3,2,1] tandy.common 2926706-2927219 ID=td_c172.D00003050;cid=172;ctype=near_overlap;nexons=3;altexons=3;ids=D00003050[4,3,1],G1150044[3,2,1] tandy.common 3053630-3075580 ID=td_c174.D00003086;cid=174;ctype=near;nexons=40;altexons=34;ids=D00003086[39,36,3],J192069[13,13,0],J96503[14,11,3],G1200044[10,10,0] ........ dgbook% egrep 'tandy.common' scaf4h6.tandy | perl -ne's/DP_D\D+/D/g; s/NCBI\D+/G/g; s/Dappu1_FM5\D+/J/g; @v=split; $b=join("-",@v[3,4]); print join("\t",$v[1],$b,$v[8]),"\n";' | grep -v 'nexons=1;' | grep far tandy.common 6833-50222 ID=td_c1.D00002342;cid=1;ctype=far;nexons=7;altexons=4;ids=D00002342[7,4,3],D00002352[7,5,2] tandy.common 8589-117973 ID=td_c2.D00002720;cid=2;ctype=far;nexons=4;ids=D00002720[8,2,2] tandy.common 8924-117644 ID=td_c3.D00002550;cid=3;ctype=far;nexons=3;ids=D00002550[6,2,2],D00002575[3,1,1] tandy.common 9649-47661 ID=td_c4.D00002421;cid=4;ctype=far;nexons=2;ids=D00002421[2,1,1] tandy.common 12339-44924 ID=td_c6.D00002350;cid=6;ctype=far;nexons=4;ids=D00002350[4,3,1] tandy.common 5822-50444 ID=td_c7.D00002341;cid=7;ctype=far;nexons=3;altexons=1;ids=D00002341[4,3,1],D00002353[1,1,0] tandy.common 119942-200500 ID=td_c9.D00002448;cid=9;ctype=far;nexons=2;ids=D00002448[4,2,2] tandy.common 363264-368204 ID=td_c16.D00002648;cid=16;ctype=far;nexons=2;ids=D00002648[4,2,2] tandy.common 363480-367988 ID=td_c17.D00002702;cid=17;ctype=far;nexons=2;ids=D00002702[4,2,2] tandy.common 365492-472053 ID=td_c18.D00002550;cid=18;ctype=far;nexons=3;ids=D00002550[6,2,2],D00002575[3,1,1] tandy.common 365824-471718 ID=td_c19.D00002720;cid=19;ctype=far;nexons=2;ids=D00002720[4,2,2] tandy.common 437838-471482 ID=td_c21.D00002438;cid=21;ctype=far;nexons=24;altexons=36;ids=D00002438[24,19,5],D00002441[12,7,5],J191562[5,5,0],J95963[8,4,4],G308044[10,9,1],G318044[5,3,2] tandy.common 358552-467487 ID=td_c22.D00002420;cid=22;ctype=far;nexons=5;ids=D00002420[7,4,2] tandy.common 471490-619599 ID=td_c26.D00002365;cid=26;ctype=far;nexons=2;ids=D00002365[4,2,2],D00002366[2,1,1] tandy.common 619038-659592 ID=td_c29.D00002550;cid=29;ctype=far;nexons=3;ids=D00002550[6,2,2],D00002575[3,1,1] tandy.common 619372-659921 ID=td_c30.D00002720;cid=30;ctype=far;nexons=3;altexons=2;ids=D00002492[2,1,1],D00002720[6,2,2] tandy.common 619659-654595 ID=td_c31.D00002481;cid=31;ctype=far;nexons=4;altexons=5;ids=D00002481[5,3,2],D00002491[6,4,2] tandy.common 620327-662013 ID=td_c33.D00002702;cid=33;ctype=far;nexons=2;ids=D00002702[4,2,2] tandy.common 622047-671416 ID=td_c34.D00002884;cid=34;ctype=far;nexons=4;ids=D00002577[4,2,2],G488044[3,2,1] tandy.common 630873-649028 ID=td_c36.D00002946;cid=36;ctype=far;nexons=2;ids=D00002946[2,1,1] tandy.common 637237-667158 ID=td_c38.D00002703;cid=38;ctype=far;nexons=4;ids=D00002703[4,2,2],J221220[3,3,0] tandy.common 640827-670107 ID=td_c39.D00002496;cid=39;ctype=far;nexons=3;ids=D00002496[4,3,1] tandy.common 631435-648466 ID=td_c42.D00002484;cid=42;ctype=far;nexons=2;altexons=1;ids=D00002484[3,2,1],G350043[1,1,0] tandy.common 651714-671637 ID=td_c43.D00002421;cid=43;ctype=far;nexons=2;ids=D00002449[4,2,2] tandy.common 926486-935874 ID=td_c52.D00002550;cid=52;ctype=far;nexons=2;ids=D00002885[4,2,2] tandy.common 927352-935008 ID=td_c53.D00002719;cid=53;ctype=far;nexons=2;ids=D00002719[2,1,1] tandy.common 927581-931796 ID=td_c54.D00002550;cid=54;ctype=far;nexons=5;altexons=5;ids=D00002550[4,4,0],D00002575[6,6,0],D00002673[2,2,0],D00002856[5,5,0],D00002857[1,1,0] tandy.common 926649-935711 ID=td_c55.D00002602;cid=55;ctype=far;nexons=14;altexons=32;ids=D00002548[2,2,0],D00002552[2,2,0],D00002577[2,2,0],D00002602[2,2,0],D00002550[1,1,0] tandy.common 1018651-1176056 ID=td_c70.D00002719;cid=70;ctype=far;nexons=3;ids=D00002719[3,2,1] tandy.common 1023619-1179981 ID=td_c71.D00002720;cid=71;ctype=far;nexons=2;ids=D00002720[4,2,2] tandy.common 1023728-1180157 ID=td_c72.D00002647;cid=72;ctype=far;nexons=2;ids=D00002647[4,2,2] tandy.common 1024593-1175884 ID=td_c75.D00002576;cid=75;ctype=far;nexons=4;ids=D00002576[5,4,1] tandy.common 1182015-1182781 ID=td_c79.D00002719;cid=79;ctype=far;nexons=2;ids=D00002719[2,2,0] tandy.common 1251432-1382820 ID=td_c82.D00002731;cid=82;ctype=far;nexons=3;ids=D00002731[6,2,2] tandy.common 1341902-1431053 ID=td_c83.D00002671;cid=83;ctype=far;nexons=5;ids=D00002671[7,5,2] tandy.common 1342459-1431670 ID=td_c84.D00002719;cid=84;ctype=far;nexons=5;ids=D00002719[5,2,1] tandy.common 1344067-1431919 ID=td_c85.D00002576;cid=85;ctype=far;nexons=2;ids=D00002576[4,2,2] tandy.common 1351595-1440133 ID=td_c90.D00002758;cid=90;ctype=far;nexons=2;ids=D00002761[4,2,2],J96205[2,1,1],G728044[2,1,1] tandy.common 1400445-1468789 ID=td_c97.D00002731;cid=97;ctype=far;nexons=2;ids=D00002731[4,2,2] tandy.common 1556950-1569320 ID=td_c103.D00002495;cid=103;ctype=far;nexons=2;ids=D00002495[2,1,1] tandy.common 1612678-1697547 ID=td_c104.D00002585;cid=104;ctype=far;nexons=2;ids=D00002585[2,1,1] tandy.common 1985473-1990936 ID=td_c114.D00002828;cid=114;ctype=far;nexons=2;ids=D00002828[4,2,2] tandy.common 1985880-1993056 ID=td_c115.D00002495;cid=115;ctype=far;nexons=4;ids=D00002495[4,2,2] tandy.common 2133587-2134384 ID=td_c128.D00002340;cid=128;ctype=far;nexons=3;altexons=2;ids=D00002340[6,6,0],D00002831[1,1,0],J95887[1,1,0],G198044[1,1,0],G812044[1,1,0] tandy.common 2247603-2356309 ID=td_c135.D00002719;cid=135;ctype=far;nexons=3;ids=D00002719[3,1,1] tandy.common 2646055-2673660 ID=td_c165.D00002978;cid=165;ctype=far;nexons=6;altexons=4;ids=D00002978[9,6,3],D00002984[3,2,1]